Interface representing a high-scoring pair (HSP) from an SSS hit. Hsp

interface Hsp {
    hsp_align_len?: number;
    hsp_bit_score?: number;
    hsp_expect?: number;
    hsp_gaps?: number;
    hsp_hit_frame?: string;
    hsp_hit_from: number;
    hsp_hit_to: number;
    hsp_hseq: string;
    hsp_identity?: number;
    hsp_init1?: number;
    hsp_initn?: number;
    hsp_mseq: string;
    hsp_num: number;
    hsp_opt?: number;
    hsp_positive?: number;
    hsp_qseq: string;
    hsp_query_frame?: string;
    hsp_query_from: number;
    hsp_query_to: number;
    hsp_score: number;
    hsp_strand?: string;
    hsp_sw_score?: number;
    hsp_zscore?: number;
}

Properties

hsp_align_len?: number

Alignment length.

hsp_bit_score?: number

Bit score.

hsp_expect?: number

Expectation value (E-value).

hsp_gaps?: number

Number of gaps in the alignment.

hsp_hit_frame?: string

Hit frame.

hsp_hit_from: number

Start position in the hit sequence.

hsp_hit_to: number

End position in the hit sequence.

hsp_hseq: string

Hit sequence in the alignment.

hsp_identity?: number

Percentage identity.

hsp_init1?: number

Initial score 1.

hsp_initn?: number

Initial score N.

hsp_mseq: string

Midline sequence in the alignment.

hsp_num: number

HSP number in the hit.

hsp_opt?: number

Optimal score.

hsp_positive?: number

Number of positive matches.

hsp_qseq: string

Query sequence in the alignment.

hsp_query_frame?: string

Query frame.

hsp_query_from: number

Start position in the query sequence.

hsp_query_to: number

End position in the query sequence.

hsp_score: number

Alignment score.

hsp_strand?: string

Strand orientation.

hsp_sw_score?: number

Smith-Waterman score.

hsp_zscore?: number

Z-score.