Interface SSSResultModel

Interface representing the result model for sequence similarity search (SSS) data. SSSResultModel

interface SSSResultModel {
    alignments?: number;
    command: string;
    db_count: number;
    db_len: number;
    db_num: number;
    dbrange?: string;
    dbs: DB[];
    end: string;
    expect_lower?: number;
    expect_upper?: number;
    filter?: string;
    gap_extend?: number;
    gap_open?: number;
    histogram?: boolean;
    hits: Hit[];
    ktup?: number;
    matrix?: string;
    program: string;
    query_acc?: string;
    query_db?: string;
    query_def: string;
    query_desc?: string;
    query_id?: string;
    query_len: number;
    query_seq?: string;
    query_stype?: string;
    query_uni_gn?: string;
    query_uni_os?: string;
    query_uni_ox?: string;
    query_uni_pe?: string;
    query_uni_sv?: string;
    query_url?: string;
    scores?: number;
    search: string;
    start: string;
    statistics?: string;
    strand?: string;
    version: string;
}

Properties

alignments? command db_count db_len db_num dbrange? dbs end expect_lower? expect_upper? filter? gap_extend? gap_open? histogram? hits ktup? matrix? program query_acc? query_db? query_def query_desc? query_id? query_len query_seq? query_stype? query_uni_gn? query_uni_os? query_uni_ox? query_uni_pe? query_uni_sv? query_url? scores? search start statistics? strand? version

Properties

Optionalalignments

alignments?: number

Number of alignments.

command

command: string

Command used for the search.

db_count

db_count: number

Number of databases searched.

db_len

db_len: number

Total length of database sequences.

db_num

db_num: number

Number of sequences in the database.

Optionaldbrange

dbrange?: string

Database range.

dbs

dbs: DB[]

Array of database metadata.

end

end: string

End position or timestamp of the search.

Optionalexpect_lower

expect_lower?: number

Lower expectation value threshold.

Optionalexpect_upper

expect_upper?: number

Upper expectation value threshold.

Optionalfilter

filter?: string

Filter applied to the search.

Optionalgap_extend

gap_extend?: number

Gap extension penalty.

Optionalgap_open

gap_open?: number

Gap opening penalty.

Optionalhistogram

histogram?: boolean

Whether a histogram was generated.

hits

hits: Hit[]

Array of hit results.

Optionalktup

ktup?: number

K-tuple length for search.

Optionalmatrix

matrix?: string

Scoring matrix used.

program

program: string

Search program name (e.g., BLAST).

Optionalquery_acc

query_acc?: string

Query accession number.

Optionalquery_db

query_db?: string

Query database.

query_def

query_def: string

Query definition.

Optionalquery_desc

query_desc?: string

Query description.

Optionalquery_id

query_id?: string

Query identifier.

query_len

query_len: number

Length of the query sequence.

Optionalquery_seq

query_seq?: string

Query sequence.

Optionalquery_stype

query_stype?: string

Query sequence type.

Optionalquery_uni_gn

query_uni_gn?: string

Query UniProt gene name.

Optionalquery_uni_os

query_uni_os?: string

Query UniProt organism.

Optionalquery_uni_ox

query_uni_ox?: string

Query UniProt organism taxonomy ID.

Optionalquery_uni_pe

query_uni_pe?: string

Query UniProt protein existence level.

Optionalquery_uni_sv

query_uni_sv?: string

Query UniProt sequence version.

Optionalquery_url

query_url?: string

Query URL.

Optionalscores

scores?: number

Number of scores calculated.

search

search: string

Search type or parameters.

start

start: string

Start position or timestamp of the search.

Optionalstatistics

statistics?: string

Statistical method used.

Optionalstrand

strand?: string

Strand orientation.

version

version: string

Program version.

Settings

Member Visibility

On This Page

Properties